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7Q07

Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the open state with NADP and tartrate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2016-06-24
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97916
Spacegroup nameI 2 3
Unit cell lengths130.827, 130.827, 130.827
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.370 - 2.200
R-factor0.19
Rwork0.186
R-free0.21230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7q03
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2502.320
High resolution limit [Å]2.2002.200
Rmerge0.1630.528
Rmeas0.1680.554
Rpim0.0390.166
Number of reflections190732766
<I/σ(I)>23.74.4
Completeness [%]100.0100
Redundancy18.210.9
CC(1/2)0.9980.385
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5291.15KARI was crystallized at 13.5 mg/ml in the following buffer 25 mM Tris/HCl pH 7.6, 2 mM dithiothreitol, 10% glycerol. The reservoir was filled with 90 ul crystallization solution (33 % (w/v) PEG 5000 MME, 100 mM MES/NaOH pH 6.5 and 200 mM ammonium sulphate). Drops of 0.7 ul protein with 0.7 ul of crystallisation solution were applied on the shelf. Crystals were firstly soaked in the crystallisation solution supplemented with 20 mM NADP, 50 mM L-Tartrate and 50 mM MgCl2 for 3 minutes, and then soaked in the crystallisation solution supplemented with 30 % v/v glycerol before freezing.

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PDB entries from 2024-10-30

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