7PYR
Crystal structure of the adenosine A2A receptor (A2A-PSB1-bRIL) in complex with preladenant conjugate PSB-2115
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-05-12 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 39.310, 180.110, 140.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.030 - 2.600 |
R-factor | 0.2 |
Rwork | 0.194 |
R-free | 0.25200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | A2A model with PSB-2113 ligand |
RMSD bond length | 0.004 |
RMSD bond angle | 0.612 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.030 | 2.693 |
High resolution limit [Å] | 2.600 | 2.600 |
Number of reflections | 15875 | 1545 |
<I/σ(I)> | 9.26 | |
Completeness [%] | 97.9 | |
Redundancy | 6.5 | |
CC(1/2) | 0.995 | 0.585 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | 24% (v/v) PEG-400 (polyethylene glycol 400, average molecular weight 400), 10-30 mM sodium thiocyanate, 100 mM sodium citrate pH 5.2, and 2% (v/v) 2,5-hexanediol |