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7PUL

Crystal structure of Endoglycosidase E GH20 domain from Enterococcus faecalis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-08
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9686
Spacegroup nameP 1 21 1
Unit cell lengths39.298, 57.046, 69.525
Unit cell angles90.00, 92.97, 90.00
Refinement procedure
Resolution44.077 - 1.400
R-factor0.1591
Rwork0.158
R-free0.18290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3rpm
RMSD bond length0.041
RMSD bond angle0.945
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.12_2829: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.0801.450
High resolution limit [Å]1.4001.400
Rmerge0.0770.244
Rmeas0.0930.295
Number of reflections603466021
<I/σ(I)>11.922.12
Completeness [%]99.799.52
Redundancy3.23
CC(1/2)0.9910.894
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291100 mM bicine/Trizma base pH 8.5, 30 mM magnesium chloride hexahydrate, 30 mM calcium chloride dihydrate, 12.5% w/v PEG 1000, 12.5% PEG w/v 3350, 12.5% v/v MPD

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PDB entries from 2024-07-03

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