7PT1
Actinobacterial 2-hydroxyacyl-CoA lyase (AcHACL) structure in complex with substrate 2-HIB-CoA and inactive cofactor 3-deaza-ThDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-15 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 103.950, 146.138, 174.749 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 87.374 - 1.553 |
Rwork | 0.160 |
R-free | 0.19360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rji |
RMSD bond length | 0.014 |
RMSD bond angle | 1.853 |
Data reduction software | autoPROC |
Data scaling software | STARANISO |
Phasing software | MoRDa |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 87.374 | 1.752 |
High resolution limit [Å] | 1.553 | 1.553 |
Rmerge | 0.114 | 1.537 |
Rpim | 0.035 | 0.473 |
Number of reflections | 100209 | 5010 |
<I/σ(I)> | 10.1 | 1.9 |
Completeness [%] | 89.4 | 60.9 |
Redundancy | 11.4 | |
CC(1/2) | 0.999 | 0.644 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 25% PEG 1500, 0.1 M MIB buffer (sodium malonate dibasic monohydrate, imidazole, boric acid) pH 6.0 5 mM 3-deazathiamin diphosphate, 1 mM 2-Hydroxyisobutyryl-CoA, 5 mM MgCl2, 5 mM ADP |