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7PPE

CRYSTAL STRUCTURE OF NAMPT IN COMPLEX WITH COMPOUND 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-11-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths60.823, 106.771, 82.625
Unit cell angles90.00, 96.35, 90.00
Refinement procedure
Resolution46.370 - 1.860
R-factor0.1499
Rwork0.148
R-free0.18650
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2gvj
RMSD bond length0.013
RMSD bond angle1.752
Data reduction softwareXDS (VERSION January 10, 2014)
Data scaling softwarepointless (version 1.9.16)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.3701.970
High resolution limit [Å]1.8601.860
Rmeas0.1070.614
Number of reflections8762213570
<I/σ(I)>9.52.1
Completeness [%]98.995
Redundancy3.352.1
CC(1/2)0.9950.750
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.62931 microliter of protein mixed with 1 microliter of reservoir buffer (27-31% PEG 3350 (w/v), 200 mM NaCl, 100 mM sodium dihydrogen phosphate pH 7.6) incubated for 5 min, then streak seeded (with crystals obtained previously under identical conditions). Ligand added prior to crystallization (2 MILLIMOLAR FROM 100 MILLIMOLAR STOCK IN DMSO) and incubated for 1.5 h at 277 K. CRYO BUFFER consisted of RESERVOIR supplemented WITH 2 MILLIMOLAR INHIBITOR AND 15% GLYCEROL

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