7PL5
Crystal structure of choline-binding module (R1-R9) of LytB from Streptococcus pneumoniae
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALBA BEAMLINE XALOC |
| Synchrotron site | ALBA |
| Beamline | XALOC |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-03-09 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.979260 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.299, 96.143, 49.096 |
| Unit cell angles | 90.00, 100.97, 90.00 |
Refinement procedure
| Resolution | 44.504 - 1.990 |
| Rwork | 0.172 |
| R-free | 0.23280 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2v05 |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.827 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | MoRDa |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.200 | 2.030 |
| High resolution limit [Å] | 1.990 | 1.990 |
| Rmerge | 0.238 | 0.952 |
| Rpim | 0.108 | 0.496 |
| Number of reflections | 28181 | 1665 |
| <I/σ(I)> | 6 | |
| Completeness [%] | 98.7 | |
| Redundancy | 5.5 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | MES buffer Zinc sulfate PEG 6000 |
