7PJI
Crystal structure of Pseudomonas aeruginosa guaB (IMP dehydrogenase) bound to ATP and GDP at 1.65A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-03 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 1.000008 |
Spacegroup name | I 4 |
Unit cell lengths | 120.947, 120.947, 145.487 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.700 - 1.650 |
R-factor | 0.1734 |
Rwork | 0.172 |
R-free | 0.19530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4avf |
RMSD bond length | 0.007 |
RMSD bond angle | 1.046 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3689) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.700 | 1.710 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.090 | 1.760 |
Rmeas | 0.094 | 1.827 |
Rpim | 0.025 | 0.489 |
Number of reflections | 84861 | 4228 |
<I/σ(I)> | 13.18 | 0.39 |
Completeness [%] | 67.8 | 7.09 |
Redundancy | 13.9 | 13.8 |
CC(1/2) | 0.999 | 0.287 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | Condition D11 of the commercial screening Morpheus (Gorrec, 2009): 0.02M Sodium formate; 0.02M Ammonium acetate; 0.02M Sodium citrate tribasic dihydrate; 0.02M Potassium sodium tartrate tetrahydrate; 0.02M Sodium oxamate, 12.5% v/v MPD; 12.5% PEG 1000; 12.5% w/v PEG 3350 in 0.1M of the buffer system Tris (base), bicine, pH 8.5 |