7PEK
Crystal structure of Triosephosphate Isomerase C216A mutant from Schizosaccharomyces pombe (SpTIM C216A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-20 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | I 4 |
Unit cell lengths | 149.010, 149.010, 99.510 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.120 - 1.740 |
R-factor | 0.1772 |
Rwork | 0.177 |
R-free | 0.20650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ff7 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.071 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.120 | 1.806 |
High resolution limit [Å] | 1.740 | 1.740 |
Rmerge | 0.096 | 1.241 |
Rmeas | 0.103 | 0.912 |
Rpim | 0.037 | 0.881 |
Number of reflections | 110326 | 10711 |
<I/σ(I)> | 13.49 | 1.01 |
Completeness [%] | 99.7 | 97.55 |
Redundancy | 7.6 | 7.3 |
CC(1/2) | 0.999 | 0.312 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 293.15 | 2.4 M Ammonium sulphate, 0.1 M Bicine pH:9.0, 11.1 mg/mL protein concentration |