7PBF
Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with di-mannuronic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976254 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.000, 80.640, 81.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.320 - 1.540 |
R-factor | 0.1719 |
Rwork | 0.171 |
R-free | 0.19500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ncz |
RMSD bond length | 0.009 |
RMSD bond angle | 0.979 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.320 | 1.640 |
High resolution limit [Å] | 1.540 | 1.540 |
Number of reflections | 34390 | 5324 |
<I/σ(I)> | 18.68 | |
Completeness [%] | 99.5 | |
Redundancy | 12.89 | |
CC(1/2) | 1.000 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 293 | 20% PEG 1500 and 0.1 M TBG buffer pH 4 |