7P97
Structure of 3-phospho-D-glycerate guanylyltransferase with product 3-GPPG bound
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 57.090, 57.090, 228.970 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.490 - 2.350 |
Rwork | 0.186 |
R-free | 0.23810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bwg |
RMSD bond length | 0.012 |
RMSD bond angle | 1.822 |
Data reduction software | XDS (Feb 5, 2021) |
Data scaling software | XDS (Feb 5, 2021) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmeas | 0.489 | 1.898 |
Number of reflections | 18963 | 31546 |
<I/σ(I)> | 5.4 | 1.3 |
Completeness [%] | 99.9 | 99.4 |
Redundancy | 10.1 | 10.6 |
CC(1/2) | 0.975 | 0.511 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 10% PEG 3000, 200 mm MgCl2, 100 mm sodium cacodylate pH 6.5 |