7P8H
chicken GRIFIN bound to blood group tetrasaccharide B (type 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 39.104, 70.554, 87.710 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.850 - 1.130 |
R-factor | 0.1546 |
Rwork | 0.153 |
R-free | 0.17600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nmj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.089 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.850 | 1.170 |
High resolution limit [Å] | 1.130 | 1.130 |
Rmerge | 0.015 | 0.305 |
Rmeas | 0.021 | 0.431 |
Number of reflections | 90857 | 8884 |
<I/σ(I)> | 22 | 2 |
Completeness [%] | 99.1 | |
Redundancy | 2 | |
CC(1/2) | 0.900 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 15 % w/v Polyethylene glycol 400; 100 mM MES pH 6.5 |