7P4U
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 120.319, 120.319, 115.201 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 60.160 - 2.740 |
R-factor | 0.2476 |
Rwork | 0.246 |
R-free | 0.27490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2q7v |
RMSD bond length | 0.005 |
RMSD bond angle | 0.806 |
Data reduction software | AutoProcess |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.199 | 2.985 |
High resolution limit [Å] | 2.740 | 2.740 |
Rmerge | 0.090 | 3.587 |
Number of reflections | 9271 | 464 |
<I/σ(I)> | 32.6 | |
Completeness [%] | 95.2 | |
Redundancy | 36.2 | |
CC(1/2) | 1.000 | 0.610 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% MPD, 30mM magnesium formate,120 mM Lithium citrate, 100mM MES pH 5.6, 10mg/ml PqsR + 1mM 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE Cryo: + 20% MPD |