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7P2M

E.coli GyrB24 with inhibitor LMD43 (EBL2560)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-02-01
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9762
Spacegroup nameC 1 2 1
Unit cell lengths76.647, 50.330, 52.697
Unit cell angles90.00, 102.25, 90.00
Refinement procedure
Resolution41.810 - 1.160
R-factor0.1349
Rwork0.134
R-free0.16120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1kzn
RMSD bond length0.011
RMSD bond angle1.578
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]51.50051.5001.180
High resolution limit [Å]1.1606.3501.160
Rmerge0.0640.0381.387
Rmeas0.0700.0411.528
Rpim0.0270.0160.631
Total number of observations276917809
Number of reflections659524433124
<I/σ(I)>12.552.31.1
Completeness [%]97.299.993
Redundancy6.66.35.7
CC(1/2)0.9990.9980.465
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP829333% PEG4000,100mM tris pH8,75mM MgCl2 1.2mM LMD43, cryo +17.5% glycerol

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PDB entries from 2026-01-28

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