7P1S
Structure of KDNase from Trichophyton Rubrum in complex with 2,3-didehydro-2,3-dideoxy-D-glycero-D-galacto-nonulosonic acid.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2018-12-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.91587 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.646, 179.008, 97.292 |
Unit cell angles | 90.00, 104.04, 90.00 |
Refinement procedure
Resolution | 179.010 - 1.920 |
R-factor | 0.2612 |
Rwork | 0.260 |
R-free | 0.28880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xcy |
RMSD bond length | 0.010 |
RMSD bond angle | 1.364 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 179.010 | 1.970 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.145 | 0.887 |
Number of reflections | 113657 | 4982 |
<I/σ(I)> | 4.6 | 0.8 |
Completeness [%] | 92.5 | 55.1 |
Redundancy | 2.9 | 2.1 |
CC(1/2) | 0.970 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 25% PEG 1500 0.1M SPG pH 8 |