7P12
DeNovoTIM13-SB, a de novo designed TIM barrel with a salt-bridge cluster
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-15 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 |
Unit cell lengths | 39.400, 39.470, 39.400 |
Unit cell angles | 113.32, 102.02, 113.30 |
Refinement procedure
Resolution | 32.650 - 1.690 |
R-factor | 0.268 |
Rwork | 0.266 |
R-free | 0.31470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yqx |
RMSD bond length | 0.004 |
RMSD bond angle | 0.686 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 32.650 | 1.750 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmerge | 0.200 | 2.794 |
Rmeas | 0.216 | 3.016 |
Rpim | 0.083 | 1.125 |
Number of reflections | 20148 | 1981 |
<I/σ(I)> | 9.66 | 1.13 |
Completeness [%] | 99.7 | 99.85 |
Redundancy | 6.8 | 6.9 |
CC(1/2) | 0.987 | 0.596 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.9 | 293 | 0.17 M sodium acetate trihydrate, 0.085 M Tris pH8.9, 23% PEG 4000, 15% glycerol |