Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7P12

DeNovoTIM13-SB, a de novo designed TIM barrel with a salt-bridge cluster

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-04-15
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9184
Spacegroup nameP 1
Unit cell lengths39.400, 39.470, 39.400
Unit cell angles113.32, 102.02, 113.30
Refinement procedure
Resolution32.650 - 1.690
R-factor0.268
Rwork0.266
R-free0.31470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6yqx
RMSD bond length0.004
RMSD bond angle0.686
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]32.6501.750
High resolution limit [Å]1.6901.690
Rmerge0.2002.794
Rmeas0.2163.016
Rpim0.0831.125
Number of reflections201481981
<I/σ(I)>9.661.13
Completeness [%]99.799.85
Redundancy6.86.9
CC(1/2)0.9870.596
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.92930.17 M sodium acetate trihydrate, 0.085 M Tris pH8.9, 23% PEG 4000, 15% glycerol

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon