7OZ7
Crystal structure of DPP8 in complex with a 4-oxo-b-lactam based inhibitor, L84
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-28 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.999890 |
Spacegroup name | P 61 |
Unit cell lengths | 149.422, 149.422, 269.767 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.740 - 2.600 |
R-factor | 0.2242 |
Rwork | 0.222 |
R-free | 0.25960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eoo |
RMSD bond length | 0.007 |
RMSD bond angle | 1.146 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.740 | 43.740 | 2.670 |
High resolution limit [Å] | 2.600 | 23.400 | 2.600 |
Rmerge | 0.111 | 0.046 | 1.652 |
Rmeas | 0.116 | 0.049 | 1.720 |
Total number of observations | 1319446 | ||
Number of reflections | 104327 | 126 | 7813 |
<I/σ(I)> | 16.2 | 55.98 | 1.95 |
Completeness [%] | 100.0 | 84.6 | 100 |
Redundancy | 12.647 | 12.69 | 12.878 |
CC(1/2) | 0.999 | 0.998 | 0.749 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.46 M Na citrate |