7OYY
E.coli's putrescine receptor variant PotF/D (4JDF) with mutation S247D in complex with spermidine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-07 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.059, 82.146, 111.071 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.150 - 1.360 |
R-factor | 0.1571 |
Rwork | 0.156 |
R-free | 0.18590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1a99 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.912 |
Data reduction software | XDS (20190806) |
Data scaling software | XSCALE (20190806) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.150 | 1.410 |
High resolution limit [Å] | 1.360 | 1.360 |
Rmerge | 0.171 | 2.530 |
Rmeas | 0.184 | 2.721 |
Rpim | 0.068 | 0.988 |
Number of reflections | 73425 | 52254 |
<I/σ(I)> | 7.58 | 0.61 |
Completeness [%] | 99.5 | 98 |
Redundancy | 7.3 | 7.3 |
CC(1/2) | 0.997 | 0.280 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.1 M MES pH 5, 30% PEG 6000 |