Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7OY7

Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97856
Spacegroup nameC 2 2 21
Unit cell lengths59.599, 71.832, 138.535
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.870 - 1.700
R-factor0.1683
Rwork0.166
R-free0.20550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7oue
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.1801.730
High resolution limit [Å]1.7001.700
Rmerge0.0880.978
Number of reflections3312710787
<I/σ(I)>121.5
Completeness [%]99.9
Redundancy8.9
CC(1/2)0.9980.722
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293MgCl2, Na acetate pH 5.0, MPD

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon