7OQI
Human OMPD-domain of UMPS in complex with substrate OMP at 1.15 Angstrom resolution, 10 minutes soaking
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.827 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.027, 61.901, 70.217 |
Unit cell angles | 90.00, 113.01, 90.00 |
Refinement procedure
Resolution | 42.550 - 1.150 |
R-factor | 0.1221 |
Rwork | 0.121 |
R-free | 0.13800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6zwy |
RMSD bond length | 0.007 |
RMSD bond angle | 1.455 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.550 | 42.550 | 1.180 |
High resolution limit [Å] | 1.150 | 5.140 | 1.150 |
Rmerge | 0.043 | 0.013 | 0.784 |
Rmeas | 0.051 | 0.016 | 0.931 |
Total number of observations | 672622 | ||
Number of reflections | 193500 | 2204 | 14230 |
<I/σ(I)> | 16.29 | 71.51 | 1.82 |
Completeness [%] | 98.8 | 96 | 98.8 |
Redundancy | 3.476 | 3.265 | 3.449 |
CC(1/2) | 1.000 | 1.000 | 0.638 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 293.15 | Ammonium sulfate, Tris/HCl, Glutathion, Glycerol |