7OOJ
Structure of D-Thr53 Ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-14 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 43 3 2 |
Unit cell lengths | 105.479, 105.479, 105.479 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.170 - 2.600 |
R-factor | 0.2426 |
Rwork | 0.241 |
R-free | 0.26860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ubq |
RMSD bond length | 0.004 |
RMSD bond angle | 1.433 |
Data reduction software | XDS |
Data scaling software | XDS (2008/2) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.220 | 47.170 | 2.650 |
High resolution limit [Å] | 2.600 | 7.580 | 2.600 |
Rmerge | 0.094 | 0.037 | 0.804 |
Number of reflections | 6632 | 334 | 285 |
<I/σ(I)> | 41.62 | 116.03 | 3.5 |
Completeness [%] | 99.9 | 98.8 | 100 |
Redundancy | 51.03 | 35.57 | 54.89 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1 M Bis-Tris, pH 7.5, 20 % polyethylene glycol monomethyl ether 2000, 50 mM CdCl2 |