7ONH
Crystal structure of the computationally designed SAKe6BE-L3 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 41 |
Unit cell lengths | 90.624, 90.624, 90.663 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.540 - 1.650 |
R-factor | 0.1601 |
Rwork | 0.159 |
R-free | 0.17570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Designed model |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.330 | 45.330 | 1.680 |
High resolution limit [Å] | 1.650 | 9.040 | 1.650 |
Rmerge | 0.042 | 0.033 | 0.177 |
Rmeas | 0.043 | 0.034 | 0.183 |
Rpim | 0.008 | 0.008 | 0.044 |
Total number of observations | 2366162 | 13872 | 72160 |
Number of reflections | 87997 | 562 | 4336 |
<I/σ(I)> | 58.1 | 110 | 14.1 |
Completeness [%] | 100.0 | 99.3 | 99.9 |
Redundancy | 26.9 | 24.7 | 16.6 |
CC(1/2) | 1.000 | 0.999 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293.15 | 0.1 M Tris pH 8.0, 2.4 M Ammonium sulfate |