7O5V
Crystal structure of holo-H44A mutant of Hydroxy ketone aldolase (SwHKA) from Sphingomonas wittichii RW1, in complex with Hydroxypyruvate
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9766 |
Spacegroup name | H 3 |
Unit cell lengths | 70.914, 70.914, 222.572 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 53.769 - 1.950 |
Rwork | 0.162 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r62 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.633 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.770 | 53.770 | 2.000 |
High resolution limit [Å] | 1.950 | 8.940 | 1.950 |
Rmerge | 0.083 | 0.022 | 0.835 |
Rmeas | 0.116 | 0.031 | 1.154 |
Rpim | 0.081 | 0.022 | 0.794 |
Number of reflections | 29321 | 300 | 2104 |
<I/σ(I)> | 7.3 | ||
Completeness [%] | 96.3 | ||
Redundancy | 2.6 | 2.7 | 2.6 |
CC(1/2) | 0.998 | 0.999 | 0.378 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277.15 | HEPES, Sodium Citrate |