7O5I
Crystal structure of apo-SwHKA (Hydroxy ketone aldolase) from Sphingomonas wittichii RW1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-26 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 42 3 2 |
Unit cell lengths | 116.376, 116.376, 116.376 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.040 - 1.350 |
R-factor | 0.1335 |
Rwork | 0.132 |
R-free | 0.16060 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.095 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | SHELXDE |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 116.380 | 116.380 | 1.370 |
High resolution limit [Å] | 1.350 | 7.390 | 1.350 |
Rmerge | 0.111 | 0.063 | 2.319 |
Rmeas | 0.114 | 0.065 | 2.405 |
Rpim | 0.025 | 0.016 | 0.627 |
Number of reflections | 59487 | 463 | 2892 |
<I/σ(I)> | 12.9 | 33.2 | 1.7 |
Completeness [%] | 100.0 | ||
Redundancy | 20.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277.15 | HEPES, Sodium Citrate |