7NZ8
Crystal structure of mouse ADAT2/ADAT3 tRNA deamination complex 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-05 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00001 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 52.291, 106.832, 130.580 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.440 - 2.120 |
R-factor | 0.203 |
Rwork | 0.201 |
R-free | 0.23340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dh1 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.880 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19rc4_4035) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.250 |
High resolution limit [Å] | 2.120 | 2.120 |
Rmerge | 0.180 | 2.420 |
Number of reflections | 42256 | 6653 |
<I/σ(I)> | 11.57 | 1.05 |
Completeness [%] | 99.8 | |
Redundancy | 13.3 | |
CC(1/2) | 0.998 | 0.522 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% (W/V) PEG3350, 0.1 M Bis-Tris Propane pH 7.5, 0.2M KSCN |