7NYB
TrmB complex with SAM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | H 3 |
Unit cell lengths | 178.190, 178.190, 37.010 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.550 - 2.500 |
R-factor | 0.2111 |
Rwork | 0.209 |
R-free | 0.25390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fca |
RMSD bond length | 0.010 |
RMSD bond angle | 1.586 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.550 | 2.500 |
High resolution limit [Å] | 2.450 | 2.450 |
Rmerge | 0.108 | 1.307 |
Rmeas | 0.113 | 1.372 |
Total number of observations | 169792 | |
Number of reflections | 16092 | 939 |
<I/σ(I)> | 13.31 | 1.91 |
Completeness [%] | 99.9 | 100 |
Redundancy | 10.551 | 10.808 |
CC(1/2) | 0.999 | 0.746 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 20%PEG4000, 20%Glycerol, 0.06M KAc, 0.08M (NH4)2SO4, 0.01M Triethylamine hydrochloride |