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7NXG

Wax synthase 1 from Acinetobacter baylyi (AbWSD1) co-crystallized with myristic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2014-05-05
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9788
Spacegroup nameI 4 2 2
Unit cell lengths118.320, 118.320, 142.560
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.100 - 1.950
R-factor0.1896
Rwork0.189
R-free0.20930
Structure solution methodSAD
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHELXCD
Refinement softwarePHENIX (1.19.1)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.10050.0002.050
High resolution limit [Å]1.95017.0001.950
Rmerge0.0870.0212.119
Rmeas0.0910.0222.206
Total number of observations487337
Number of reflections36998745049
<I/σ(I)>19.9178.771.46
Completeness [%]99.797.499.4
Redundancy13.17210.09512.699
CC(1/2)1.0001.0000.659
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP277.15Native crystal: Crystals were grown by in situ proteolysis with trypsin. Trypsin was added in a 1:200 (w/w) ration to 20 mg/mL native His6-TF-AbWSD1 before set up of the crystallization screens. 100 nL precipitant (17.3 % ethanol, 0.2 M MgCl2, 0.1 M TRIS pH 8.0) were added to 200 nL protein using 96-well plates with a Cartesian pipetting robot (Zinsser Analytic). Plates were stored at 277.15 K. Crystals were transferred into a cryoprotectant consisting of mother liquor supplemented with 30 % ethylene glycol and then flash cooled in liquid nitrogen.
2VAPOR DIFFUSION, SITTING DROP277.15SeMet crystal: Trypsin was added in a 1:1000 ratio (w/w) to 15 mg/mL selenomethionine-labelled His6-TF-AbWSD1. Sitting drops consisting of 100 nL protein and 100 nL precipitant (14.1 % ethanol, 0.1 M MgCl2, 0.1 M HEPES pH 7.5) were pipetted with a Gryphon robot (Art Robbins Instruments). The 96-well plates were stored at 277.15 K. For cryoprotection of the crystals, 2-methyl-2,4-pentanediol was added to the crystallization drop by transferring it five times with a 0.4 mm LithoLoop (Molecular Dimensions) at 277.15 K. Crystals were then harvested from the drop and flash-cooled in liquid nitrogen.

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PDB entries from 2024-11-13

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