7NXG
Wax synthase 1 from Acinetobacter baylyi (AbWSD1) co-crystallized with myristic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-05-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9788 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 118.320, 118.320, 142.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.100 - 1.950 |
R-factor | 0.1896 |
Rwork | 0.189 |
R-free | 0.20930 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXCD |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.100 | 50.000 | 2.050 |
High resolution limit [Å] | 1.950 | 17.000 | 1.950 |
Rmerge | 0.087 | 0.021 | 2.119 |
Rmeas | 0.091 | 0.022 | 2.206 |
Total number of observations | 487337 | ||
Number of reflections | 36998 | 74 | 5049 |
<I/σ(I)> | 19.91 | 78.77 | 1.46 |
Completeness [%] | 99.7 | 97.4 | 99.4 |
Redundancy | 13.172 | 10.095 | 12.699 |
CC(1/2) | 1.000 | 1.000 | 0.659 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | Native crystal: Crystals were grown by in situ proteolysis with trypsin. Trypsin was added in a 1:200 (w/w) ration to 20 mg/mL native His6-TF-AbWSD1 before set up of the crystallization screens. 100 nL precipitant (17.3 % ethanol, 0.2 M MgCl2, 0.1 M TRIS pH 8.0) were added to 200 nL protein using 96-well plates with a Cartesian pipetting robot (Zinsser Analytic). Plates were stored at 277.15 K. Crystals were transferred into a cryoprotectant consisting of mother liquor supplemented with 30 % ethylene glycol and then flash cooled in liquid nitrogen. | |
2 | VAPOR DIFFUSION, SITTING DROP | 277.15 | SeMet crystal: Trypsin was added in a 1:1000 ratio (w/w) to 15 mg/mL selenomethionine-labelled His6-TF-AbWSD1. Sitting drops consisting of 100 nL protein and 100 nL precipitant (14.1 % ethanol, 0.1 M MgCl2, 0.1 M HEPES pH 7.5) were pipetted with a Gryphon robot (Art Robbins Instruments). The 96-well plates were stored at 277.15 K. For cryoprotection of the crystals, 2-methyl-2,4-pentanediol was added to the crystallization drop by transferring it five times with a 0.4 mm LithoLoop (Molecular Dimensions) at 277.15 K. Crystals were then harvested from the drop and flash-cooled in liquid nitrogen. |