7NUZ
Proteinase K structure at atomic resolution from crystals grown in agarose gel
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 67.829, 67.829, 106.999 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.770 - 1.090 |
R-factor | 0.1717 |
Rwork | 0.171 |
R-free | 0.19050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2v8b |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.7.4) |
Phasing software | REFMAC |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.960 | 47.960 | 1.110 |
High resolution limit [Å] | 1.090 | 5.970 | 1.090 |
Rmerge | 0.067 | 0.040 | 0.498 |
Rmeas | 0.071 | 0.043 | 0.531 |
Rpim | 0.023 | 0.016 | 0.180 |
Total number of observations | 930710 | 7229 | 41402 |
Number of reflections | 103912 | 769 | 4984 |
<I/σ(I)> | 15.4 | 37 | 4 |
Completeness [%] | 99.7 | 99.6 | 99.1 |
Redundancy | 9 | 9.4 | 8.3 |
CC(1/2) | 0.987 | 0.861 | 0.867 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | COUNTER-DIFFUSION | 6.5 | 293.5 | 0.5 M NaNO3, 0.025 M Na citrate (pH 6.5) |