7NR1
Crystal structure of holo-S116A mutant of Hydroxy ketone aldolase (SwHKA) from Sphingomonas wittichii RW1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | H 3 |
Unit cell lengths | 71.052, 71.052, 222.689 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 59.310 - 2.300 |
Rwork | 0.215 |
R-free | 0.25120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r62 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.482 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 74.230 | 74.230 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.189 | 0.057 | 1.418 |
Rmeas | 0.215 | 0.064 | 1.706 |
Rpim | 0.102 | 0.028 | 0.934 |
Number of reflections | 18614 | 326 | 1792 |
<I/σ(I)> | 7.5 | ||
Completeness [%] | 100.0 | 99.8 | 99.9 |
Redundancy | 8.5 | 9.8 | 6.1 |
CC(1/2) | 0.995 | 0.999 | 0.408 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 292.15 | PEG 400, HEPES, Magnesium Chloride |