7NQ6
High resolution crystal structure of C-terminal domain (residues 715-866) of Nucleoporin-98
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 72.070, 72.070, 91.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.560 - 1.500 |
R-factor | 0.1722 |
Rwork | 0.171 |
R-free | 0.19190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5e0q |
RMSD bond length | 0.008 |
RMSD bond angle | 0.962 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.600 | 1.540 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmeas | 0.148 | 0.470 |
Rpim | 0.015 | 1.100 |
Number of reflections | 39371 | 2857 |
<I/σ(I)> | 33.4 | 0.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 90.2 | 37.8 |
CC(1/2) | 1.000 | 0.420 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 278 | 8% (v/w) PEG 6000, 8% (v/v) 2-methy-2,4-pentanediol, 0.1 M HEPES |