7NLI
S. cerevisiae Ty1 p22 restriction factor, Gag CA-CTD, AUG2 variant
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-08 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97928, 0.97943, 0.97281 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 280.890, 280.890, 40.405 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 91.943 - 3.119 |
R-factor | 0.2346 |
Rwork | 0.233 |
R-free | 0.25780 |
Structure solution method | MAD |
Starting model (for MR) | Ty1 p22 |
Data reduction software | DIALS (1.6.3) |
Data scaling software | Aimless (0.6.2) |
Phasing software | SHELXDE (2018/1) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 140.450 | 3.830 | 3.330 |
High resolution limit [Å] | 3.119 | 3.500 | 3.119 |
Rmeas | 0.246 | 0.970 | 1.313 |
Rpim | 0.177 | 0.167 | |
Number of reflections | 31760 | 2927 | 5059 |
<I/σ(I)> | 24.5 | 5.2 | 6.8 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 112.8 | 56.7 | 115.8 |
CC(1/2) | 0.983 | 1.000 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 260 nL Protein (13.6 mg/ml in 50 mM Sodium Acetate pH 5.0, 300 mM NaCl 1mM TCEP) 120 nL Mother Liquor (27.9% Glycerol, 17.7% PEG 4K 0.1M HEPES pH 7.5) 20 nL Seed solution (seeds in 20% Glycerol, 31% PEG 4K 0.1M HEPES pH 7.5) |