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7NLI

S. cerevisiae Ty1 p22 restriction factor, Gag CA-CTD, AUG2 variant

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2018-03-08
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97928, 0.97943, 0.97281
Spacegroup nameP 65 2 2
Unit cell lengths280.890, 280.890, 40.405
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution91.943 - 3.119
R-factor0.2346
Rwork0.233
R-free0.25780
Structure solution methodMAD
Starting model (for MR)Ty1 p22
Data reduction softwareDIALS (1.6.3)
Data scaling softwareAimless (0.6.2)
Phasing softwareSHELXDE (2018/1)
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]140.4503.8303.330
High resolution limit [Å]3.1193.5003.119
Rmeas0.2460.9701.313
Rpim0.1770.167
Number of reflections3176029275059
<I/σ(I)>24.55.26.8
Completeness [%]100.0100100
Redundancy112.856.7115.8
CC(1/2)0.9831.0000.760
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5291260 nL Protein (13.6 mg/ml in 50 mM Sodium Acetate pH 5.0, 300 mM NaCl 1mM TCEP) 120 nL Mother Liquor (27.9% Glycerol, 17.7% PEG 4K 0.1M HEPES pH 7.5) 20 nL Seed solution (seeds in 20% Glycerol, 31% PEG 4K 0.1M HEPES pH 7.5)

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PDB entries from 2024-10-16

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