7N7H
X-ray crystal structure of Viperin-like enzyme from Nematostella vectensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9893 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.875, 50.533, 137.746 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.110 - 1.420 |
R-factor | 0.1526 |
Rwork | 0.152 |
R-free | 0.17230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vsl |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.110 | 29.110 | 1.440 |
High resolution limit [Å] | 1.420 | 7.780 | 1.420 |
Rmerge | 0.082 | 0.045 | 0.521 |
Rmeas | 0.086 | 0.048 | 0.548 |
Rpim | 0.024 | 0.014 | 0.170 |
Total number of observations | 3891 | 24010 | |
Number of reflections | 49635 | 370 | 2381 |
<I/σ(I)> | 17 | 37.1 | 3.8 |
Completeness [%] | 100.0 | 98.7 | 100 |
Redundancy | 12.4 | 10.5 | 10.1 |
CC(1/2) | 0.999 | 0.999 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M Tris-HCl, pH 7, 20% (w/v) PEG 2000-MME |