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7N79

O2-, PLP-dependent desaturase Plu4 holo-enzyme

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL9-2
Synchrotron siteSSRL
BeamlineBL9-2
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-27
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 1 21 1
Unit cell lengths75.022, 72.195, 76.271
Unit cell angles90.00, 112.09, 90.00
Refinement procedure
Resolution37.750 - 1.980
R-factor0.1684
Rwork0.166
R-free0.21520
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6c3d
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.75037.7502.030
High resolution limit [Å]1.9809.0601.980
Rmerge0.0700.0512.012
Rmeas0.0760.0552.185
Rpim0.0290.0200.838
Total number of observations420923147
Number of reflections521555883510
<I/σ(I)>15.2481.4
Completeness [%]98.69994.2
Redundancy6.97.26.6
CC(1/2)0.9970.9980.514
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1 M Bis-Tris:HCl; 27% PEG 3350; 0.2 M ammonium acetate; microseeded from crystals grown at pH 6.0; soaked with 2 mM PLP for 2 h

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PDB entries from 2024-05-15

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