7N07
Crystal structure of the apo 3D6 antibody fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-09-27 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9801 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 84.429, 84.429, 161.022 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.000 - 2.400 |
R-factor | 0.1986 |
Rwork | 0.195 |
R-free | 0.23910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dfb |
RMSD bond length | 0.008 |
RMSD bond angle | 1.342 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.28) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.000 | 47.950 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.128 | 0.039 | 1.570 |
Rmeas | 0.132 | 0.040 | 1.608 |
Rpim | 0.029 | 0.009 | 0.341 |
Number of reflections | 23589 | 548 | 2430 |
<I/σ(I)> | 20.4 | ||
Completeness [%] | 100.0 | 99.5 | 100 |
Redundancy | 10.9 | ||
CC(1/2) | 0.999 | 0.999 | 0.877 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.17 M ammonium sulfate, 25.5% (w/v) PEG 4000, and 15% (v/v) glycerol |