7MZF
SARS-CoV-2 receptor binding domain bound to Fab PDI 37
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953725 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 83.919, 147.665, 146.099 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.457 - 2.493 |
R-factor | 0.1872 |
Rwork | 0.185 |
R-free | 0.22720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6w41 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.700 | 48.700 | 2.640 |
High resolution limit [Å] | 2.490 | 7.380 | 2.490 |
Rmerge | 0.171 | 0.052 | 1.586 |
Rmeas | 0.180 | 0.056 | 1.668 |
Total number of observations | 325436 | ||
Number of reflections | 31884 | 1336 | 4951 |
<I/σ(I)> | 11.33 | 33.23 | 1.44 |
Completeness [%] | 99.5 | 99.3 | 96.9 |
Redundancy | 10.207 | 9.062 | 10.288 |
CC(1/2) | 0.997 | 0.998 | 0.641 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M ammonium sulphate, 20% PEG3350, 0.1 M Tris chloride pH 8.5 |