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7MZ0

Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2013-10-01
DetectorADSC QUANTUM 315r
Wavelength(s)0.97648
Spacegroup nameP 1 21 1
Unit cell lengths54.649, 79.172, 54.819
Unit cell angles90.00, 106.27, 90.00
Refinement procedure
Resolution19.793 - 2.021
R-factor0.2239
Rwork0.221
R-free0.27570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bpx
RMSD bond length0.003
RMSD bond angle1.073
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]20.00020.0002.050
High resolution limit [Å]2.0205.4502.020
Rmerge0.0790.0340.469
Total number of observations124548
Number of reflections2932315071429
<I/σ(I)>8
Completeness [%]99.899.798.1
Redundancy4.24.33.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29814% to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5)

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