7MZ0
Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-01 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97648 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 54.649, 79.172, 54.819 |
Unit cell angles | 90.00, 106.27, 90.00 |
Refinement procedure
Resolution | 19.793 - 2.021 |
R-factor | 0.2239 |
Rwork | 0.221 |
R-free | 0.27570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bpx |
RMSD bond length | 0.003 |
RMSD bond angle | 1.073 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.050 |
High resolution limit [Å] | 2.020 | 5.450 | 2.020 |
Rmerge | 0.079 | 0.034 | 0.469 |
Total number of observations | 124548 | ||
Number of reflections | 29323 | 1507 | 1429 |
<I/σ(I)> | 8 | ||
Completeness [%] | 99.8 | 99.7 | 98.1 |
Redundancy | 4.2 | 4.3 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 14% to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5) |