7MS6
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with (2-fluoro-4-((4-phenylpiperidin-1-yl)sulfonyl)benzoyl)glycine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-02 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.54178 |
Spacegroup name | P 43 |
Unit cell lengths | 53.575, 53.575, 54.097 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.070 - 1.550 |
R-factor | 0.1486 |
Rwork | 0.148 |
R-free | 0.16380 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6nft |
RMSD bond length | 0.015 |
RMSD bond angle | 1.978 |
Data reduction software | xia2 |
Data scaling software | Aimless (0.7.4) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.100 | 38.070 | 1.580 |
High resolution limit [Å] | 1.550 | 8.490 | 1.550 |
Rmerge | 0.044 | 0.062 | 0.115 |
Rmeas | 0.047 | 0.067 | 0.125 |
Rpim | 0.016 | 0.025 | 0.049 |
Total number of observations | 1002 | 6918 | |
Number of reflections | 22155 | 144 | 1082 |
<I/σ(I)> | 33.5 | 47.8 | 13.7 |
Completeness [%] | 99.3 | 99.2 | 97.3 |
Redundancy | 7.8 | 7 | 6.4 |
CC(1/2) | 0.998 | 0.993 | 0.984 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 2 M ammonium sulfate, 0.2 M sodium acetate, 0.1 M HEPES pH 7.5, 5% MPD |