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7MOM

Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) in complex with a metaphosphate intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-12-07
DetectorMARMOSAIC 325 mm CCD
Wavelength(s)1
Spacegroup nameP 21 3
Unit cell lengths124.896, 124.896, 124.896
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.530 - 1.700
R-factor0.1165
Rwork0.115
R-free0.14100
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.009
RMSD bond angle1.584
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.730
High resolution limit [Å]1.7001.700
Rmeas0.0600.969
Number of reflections714303538
<I/σ(I)>40.82.6
Completeness [%]100.0
Redundancy10
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2980.4 M NaCl, 100mM HEPES pH7.2, 50 mM beta-mercaptoethanol at 298K (3 ul of 4.5 mg/ml protein plus 1 ul of well buffer in the crystallization drop). The formed crystal was soaked in 30% PEG400, 13mM MgCl2, 33mM NaF, 50 mM beta-mercaptoethanol, 66 mM HEPES, pH 8.0, and 0.1 mM 5-InsP7 for 2 hours.

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