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7MOJ

Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with a metaphosphate intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyCCD
Collection date2017-11-16
DetectorMARMOSAIC 325 mm CCD
Wavelength(s)1
Spacegroup nameP 21 3
Unit cell lengths125.152, 125.152, 125.152
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.760 - 1.900
R-factor0.1159
Rwork0.114
R-free0.14780
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.009
RMSD bond angle1.520
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.930
High resolution limit [Å]1.9001.900
Rmeas0.0740.871
Number of reflections516882531
<I/σ(I)>27.82.7
Completeness [%]100.0
Redundancy7.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2980.4 M NaCl, 100 mM HEPES pH 7.2, 50 mM beta-mercaptoethanol at 298K (3 ul of 5.5 mg/ml protein plus 1 ul of well buffer in the crystallization drop). The formed crystal was soaked in 30% PEG400, 13mM MgCl2, 33mM NaF, 50 mM beta-mercaptoethanol, 66 mM HEPES, pH 7.2, and 5 mM 5-InsP7 for 2 days, and transferred into pH 10.0, 50 mM CHES for 1 hour.

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