7MNX
Crystal Structure of Nup358/RanBP2 Ran-binding domain 2 in complex with Ran-GPPNHP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.173, 133.975, 182.516 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.820 - 2.400 |
R-factor | 0.1928 |
Rwork | 0.192 |
R-free | 0.23010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rrp |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.820 | 29.830 | 2.490 |
High resolution limit [Å] | 2.400 | 5.160 | 2.400 |
Rmeas | 0.174 | 0.077 | 2.504 |
Rpim | 0.047 | 0.021 | 0.705 |
Total number of observations | 1189731 | 124166 | 107541 |
Number of reflections | 89794 | 9381 | 8716 |
<I/σ(I)> | 9.7 | 23.3 | 1.1 |
Completeness [%] | 98.8 | 98.9 | 96.9 |
Redundancy | 13.2 | 13.2 | 12.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 15% w/v PEG3350, 0.125 M magnesium formate |