7MHH
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) at 277 K
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 277 |
Detector technology | PIXEL |
Collection date | 2020-06-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.023, 54.358, 44.970 |
Unit cell angles | 90.00, 101.50, 90.00 |
Refinement procedure
Resolution | 48.960 - 2.191 |
R-factor | 0.2021 |
Rwork | 0.199 |
R-free | 0.25250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yb7 |
Data reduction software | xia2 (0.5.902-gffa11588-dials-1.14) |
Data scaling software | DIALS (1.14.13-g10ecfbb15-release) |
Phasing software | PHASER (1.18.2_3874) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.962 | 48.974 | 2.229 |
High resolution limit [Å] | 2.191 | 5.944 | 2.191 |
Rmerge | 0.292 | 0.099 | 1.805 |
Rmeas | 0.316 | 0.107 | 1.954 |
Rpim | 0.119 | 0.040 | 0.742 |
Total number of observations | 97820 | ||
Number of reflections | 14120 | 745 | 682 |
<I/σ(I)> | 4.4679 | 12.292 | 1.1047 |
Completeness [%] | 99.9 | ||
Redundancy | 6.9278 | 6.8456 | 6.8651 |
CC(1/2) | 0.985 | 0.996 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 22% PEG 4000, 100 mM HEPES pH 7.0, 3-5% DMSO |