7MGC
Concanavalin A bound to a DNA glycoconjugate, G(Man-T)AC
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-02-25 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 1.0782 |
| Spacegroup name | P 2 21 21 |
| Unit cell lengths | 69.330, 117.340, 122.400 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 84.700 - 2.920 |
| R-factor | 0.23168 |
| Rwork | 0.229 |
| R-free | 0.27679 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5cna |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.539 |
| Data reduction software | iMOSFLM |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 84.700 | 3.080 |
| High resolution limit [Å] | 2.920 | 2.920 |
| Rmerge | 0.148 | 0.560 |
| Rmeas | 0.160 | 0.599 |
| Number of reflections | 19900 | 3178 |
| <I/σ(I)> | 4.1051 | |
| Completeness [%] | 94.3 | 99.75 |
| Redundancy | 7.39 | 7.95 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 295 | Sitting drop comprising 1 uL of Concanavalin A (40 uM) and G(Man-T)AC (160 uM) + 1 uL crystallization condition (Helix screen, condition H6: 0.1 M potassium chloride, 0.002 M spermine tetrahydrochloride, 0.05 M bis-Tris (pH 7), 15% w/v PEG 2000 MME). Reservoir contained 70 uL of crystallization condition |






