7MG6
Concanavalin A bound to a DNA glycoconjugate, Man-AGCT
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-25 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0782 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 65.729, 70.890, 125.839 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.890 - 1.700 |
R-factor | 0.178 |
Rwork | 0.177 |
R-free | 0.20700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jbc |
RMSD bond length | 0.014 |
RMSD bond angle | 1.689 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.890 | 1.790 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.098 | 0.240 |
Number of reflections | 61815 | 9422 |
<I/σ(I)> | 2.7065 | |
Completeness [%] | 99.6 | 100 |
Redundancy | 8.75 | 9.03 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | Sitting drop comprising 1 uL of Concanavalin A (40 uM) and Man-AGCT (160 uM) + 1 uL crystallization condition (Helix screen, condition D3: 0.2 M lithium sulfate, 0.05 M bis Tris (pH 7), 20% v/v MPD). Reservoir contained 70 uL of crystallization condition. |