Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MG6

Concanavalin A bound to a DNA glycoconjugate, Man-AGCT

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2020-02-25
DetectorDECTRIS EIGER X 9M
Wavelength(s)1.0782
Spacegroup nameP 21 2 21
Unit cell lengths65.729, 70.890, 125.839
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution70.890 - 1.700
R-factor0.178
Rwork0.177
R-free0.20700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1jbc
RMSD bond length0.014
RMSD bond angle1.689
Data reduction softwareiMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.8901.790
High resolution limit [Å]1.7001.700
Rmerge0.0980.240
Number of reflections618159422
<I/σ(I)>2.7065
Completeness [%]99.6100
Redundancy8.759.03
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7295Sitting drop comprising 1 uL of Concanavalin A (40 uM) and Man-AGCT (160 uM) + 1 uL crystallization condition (Helix screen, condition D3: 0.2 M lithium sulfate, 0.05 M bis Tris (pH 7), 20% v/v MPD). Reservoir contained 70 uL of crystallization condition.

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon