7MG5
Concanavalin A bound to a DNA glycoconjugate, Man-ATAT
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-25 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0782 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 65.689, 70.700, 125.870 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.010 - 2.100 |
R-factor | 0.203 |
Rwork | 0.201 |
R-free | 0.24500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jbc |
RMSD bond length | 0.011 |
RMSD bond angle | 1.540 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.010 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.069 | 0.290 |
Number of reflections | 32700 | 5004 |
<I/σ(I)> | 7.1233 | |
Completeness [%] | 98.3 | 99.9 |
Redundancy | 7.3 | 7.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | Sitting drop comprising 1 uL of Concanavalin A (40 uM) and Man-ATAT (160 uM) + 1 uL crystallization condition (Helix screen, condition D9: 0.05 M bis-Tris (pH 7), 2 M ammonium sulfate, 5% v/v PEG 400). Reservoir contained 70 uL of crystallization condition. |