7MER
Structure of ALDH4A1 complexed with trans-4-Hydroxy-L-proline
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-24 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.056, 94.600, 132.587 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 77.010 - 1.740 |
R-factor | 0.1652 |
Rwork | 0.164 |
R-free | 0.18960 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3v9j |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 132.590 | 132.590 | 1.770 |
High resolution limit [Å] | 1.740 | 9.510 | 1.740 |
Rmerge | 0.131 | 0.032 | 1.078 |
Rmeas | 0.139 | 0.034 | 1.160 |
Rpim | 0.048 | 0.012 | 0.418 |
Total number of observations | 904402 | 5729 | 37591 |
Number of reflections | 110402 | 774 | 5207 |
<I/σ(I)> | 11.9 | 32.7 | 1.9 |
Completeness [%] | 99.7 | 98.5 | 95.6 |
Redundancy | 8.2 | 7.4 | 7.2 |
CC(1/2) | 0.998 | 0.999 | 0.662 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Bis Tris pH 6-7, 15-25% PEG 3350, and 0.2 M Li2SO4 |