7ME6
Structure of the apo form of YcnI
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-12-13 |
Detector | RAYONIX MX-300 |
Wavelength(s) | .97872 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 90.425, 90.425, 208.471 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.482 - 2.053 |
R-factor | 0.1978 |
Rwork | 0.196 |
R-free | 0.22100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Cu YcnI (to be deposited) |
RMSD bond length | 0.007 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.100 | 2.110 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmeas | 0.138 | |
Number of reflections | 59466 | 4302 |
<I/σ(I)> | 12.06 | 1.77 |
Completeness [%] | 99.8 | |
Redundancy | 11.1 | |
CC(1/2) | 0.997 | 0.516 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M citric acid, 2.394 M ammonium sulfate |