7MDC
Full-length wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 96.718, 96.718, 183.382 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.580 - 2.700 |
Rwork | 0.193 |
R-free | 0.23590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7mde |
RMSD bond length | 0.007 |
RMSD bond angle | 0.922 |
Data reduction software | DIALS (1.14.5-g19190e3b9-release) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.580 | 2.797 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.258 | 1.887 |
Rmeas | 0.270 | 1.975 |
Rpim | 0.081 | 0.580 |
Number of reflections | 24663 | 2389 |
<I/σ(I)> | 8.06 | |
Completeness [%] | 99.9 | 99.92 |
Redundancy | 10.9 | 11.5 |
CC(1/2) | 0.996 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 295 | Precipitant composition: 1 part 0.1M imidazole pH 7.8, 10% (v/v) PEG 400, 150 mM Li2SO4, 11 mM (S)-N-(3-amino-3-oxo-1-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)propyl)hexanamide plus 3.5 parts 0.1M tris pH 7.2, 25%(v/v) PEG400, 200 mM Li2SO4 |