Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MDC

Full-length wildtype ClbP inhibited by hexanoyl-D-asparagine boronic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2019-12-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameP 42 21 2
Unit cell lengths96.718, 96.718, 183.382
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.580 - 2.700
Rwork0.193
R-free0.23590
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7mde
RMSD bond length0.007
RMSD bond angle0.922
Data reduction softwareDIALS (1.14.5-g19190e3b9-release)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.5802.797
High resolution limit [Å]2.7002.700
Rmerge0.2581.887
Rmeas0.2701.975
Rpim0.0810.580
Number of reflections246632389
<I/σ(I)>8.06
Completeness [%]99.999.92
Redundancy10.911.5
CC(1/2)0.9960.534
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE295Precipitant composition: 1 part 0.1M imidazole pH 7.8, 10% (v/v) PEG 400, 150 mM Li2SO4, 11 mM (S)-N-(3-amino-3-oxo-1-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)propyl)hexanamide plus 3.5 parts 0.1M tris pH 7.2, 25%(v/v) PEG400, 200 mM Li2SO4

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon