7M4N

Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron site	Australian Synchrotron
Beamline	MX2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-09-17
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.953724
Spacegroup name	P 1 21 1
Unit cell lengths	41.791, 84.414, 96.418
Unit cell angles	90.00, 102.15, 90.00

Refinement procedure

Resolution	42.210 - 2.520
R-factor	0.2214
Rwork	0.216
R-free	0.27320
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	RNF216/ubiquitin
RMSD bond length	0.003
RMSD bond angle	0.598
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER
Refinement software	PHENIX (dev_3965)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	47.130	2.620
High resolution limit [Å]	2.520	2.520
Rmerge	0.153	0.933
Rmeas	0.208	1.286
Rpim	0.146	0.882
Number of reflections	22096	2331
<I/σ(I)>	5.6	1.2
Completeness [%]	98.8	91.7
Redundancy	3.5	3.4
CC(1/2)	0.987	0.480

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7.9	293	0.2M ammonium sulfate, 30% PEG 4000