7LSJ
Cu-bound crystal structure of the engineered cyt cb562 variant, DiCyt2 - H63A, crystallized in the presence of Cu(II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.885 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.280, 82.720, 38.500 |
Unit cell angles | 90.00, 100.78, 90.00 |
Refinement procedure
Resolution | 34.400 - 1.260 |
R-factor | 0.1754 |
Rwork | 0.175 |
R-free | 0.19240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bc5 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.826 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.400 | 1.305 |
High resolution limit [Å] | 1.260 | 1.260 |
Rmerge | 0.748 | 1.130 |
Rmeas | 0.765 | 1.158 |
Rpim | 0.159 | 0.247 |
Number of reflections | 54833 | 5120 |
<I/σ(I)> | 11.09 | 2.71 |
Completeness [%] | 95.5 | 92.07 |
Redundancy | 23.5 | 22.3 |
CC(1/2) | 0.804 | 0.572 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | PEG1500 24%, CaCl2 200 mM, pH 8 EPPS 100 mM |