7LMD
SARS-CoV-2 3CLPro in complex with 2-(benzotriazol-1-yl)-N-[4-(1H-pyrazol-4-yl)phenyl]-N-(3-thienylmethyl)acetamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2020-11-22 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.978 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.159, 54.341, 44.450 |
Unit cell angles | 90.00, 101.01, 90.00 |
Refinement procedure
Resolution | 26.100 - 1.960 |
R-factor | 0.19 |
Rwork | 0.188 |
R-free | 0.23350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wqf |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.103 | 2.030 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.060 | 0.240 |
Rmeas | 0.080 | 0.290 |
Rpim | 0.040 | 0.160 |
Number of reflections | 19327 | 1911 |
<I/σ(I)> | 4.7 | 12.9 |
Completeness [%] | 98.7 | 98.25 |
Redundancy | 3.2 | |
CC(1/2) | 0.990 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289.15 | 0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 6.5, 25% w/v Polyethylene glycol 3,350 |