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7LJI

Structure of poly(aspartic acid) hydrolase PahZ2 with Gd+3 bound

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-03-14
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.11608
Spacegroup nameP 21 21 21
Unit cell lengths48.670, 147.870, 197.140
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution98.570 - 1.850
R-factor0.1457
Rwork0.145
R-free0.16180
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.209
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareAutoSol
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]98.5701.920
High resolution limit [Å]1.8501.850
Number of reflections24475524036
<I/σ(I)>23.232.53
Completeness [%]94.5
Redundancy2
CC(1/2)0.9990.886
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29515% PEG 3350, 0.1 M HEPES pH 6.5, and the silver bullets D4 (Hampton) cocktail (0.005M gadolinium(III) chloride hexahydrate, 0.005M samarium(III) chloride hexahydrate, 0.05M benzamidine hydrochloride, 0.25% w/v salicin, and 0.02M HEPES pH 6.8)

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PDB entries from 2024-08-14

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